Single-Cell Genomics

scverse Conference 2025

Abstract talk.

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Logan Blaine

Arc Institute scverse Satellite Workshop

Workshop presentation.

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Logan Blaine

PerTurbo

Robust and efficient analysis of single-cell perturbation studies — a scalable Bayesian analysis framework for large-scale Perturb-seq screens.

IGVF Consortium CRISPR Screen Pipeline featured image

IGVF Consortium CRISPR Screen Pipeline

A Nextflow pipeline for analyzing single-cell CRISPR screen data, developed within the IGVF consortium CRISPR Focus Group.

MEGATRON featured image

MEGATRON

MEGA TRajectories of clONes — a computational framework for single-cell lineage tracing analysis using mitochondrial mutations.

scDNA Analysis Pipeline

In-house pipelines for calling copy number variants, structural variants, and single nucleotide variants from single-cell whole genome sequencing data.