Publications

L. Ferreira DaSilva

Equal contribution

Equal contribution

, E. Jiang, A. Barrera, M. Nzima, I. Whaling, T. Barry, E. Che, A. Kyle, B. Becerra, R. Rai, A. Gschwind, O. Pushkarev, S. Geraghty, S. Raghavan, T. Cowart, Q. Vinh, C. Park, S. Booeshaghi, S. S. Yi, R. Sherwood, B. Hitz, D. Bauer, C. Gersbach, G. Hon, J. Engreitz, E. Katsevich, L. Pinello (2026). A unified end-to-end pipeline for reproducibility analysis of consortium-scale single-cell CRISPR screen datasets. In preparation.

Equal contribution

Equal contribution

, J. Ryu, L. Ferreira, M. Jankowiak, M. Heinig, L. Pinello (2026). A scalable Bayesian analysis method for large single cell CRISPR screens. In preparation.

Stamatis Papathanasiou, Styliani Markoulaki, Logan Blaine, Mitchell L. Leibowitz, Cheng-Zhong Zhang, Rudolf Jaenisch, David Pellman (2021). Whole chromosome loss and genomic instability in mouse embryos after CRISPR-Cas9 genome editing. Nature Communications, 12(5855).

Mitchell L. Leibowitz, Stamatis Papathanasiou, Phillip A. Doerfler, Logan Blaine, Lili Sun, Yu Yao, Cheng-Zhong Zhang, Mitchell J. Weiss, David Pellman (2021). Chromothripsis as an on-target consequence of CRISPR–Cas9 genome editing. Nature Genetics, 53(895).

Neil T. Umbreit, Cheng-Zhong Zhang, Luke D. Lynch, Logan Blaine, Anna M. Cheng, Richard Tourdot, Lili Sun, Hannah F. Almubarak, Kim Judge, Thomas J. Mitchell, Alexander Spektor, David Pellman (2020). Mechanisms generating cancer genome complexity from a single cell division error. Science, 368.