PerTurbo
Robust and efficient analysis of single-cell perturbation studies — a scalable Bayesian analysis framework for large-scale Perturb-seq screens.
Selected Projects
I enjoy making things. Here are a selection of projects that I have worked on over the years.
IGVF Consortium CRISPR Screen Pipeline
A Nextflow pipeline for analyzing single-cell CRISPR screen data, developed within the IGVF consortium CRISPR Focus Group.
MEGATRON
MEGA TRajectories of clONes — a computational framework for single-cell lineage tracing analysis using mitochondrial mutations.
scDNA Analysis Pipeline
In-house pipelines for calling copy number variants, structural variants, and single nucleotide variants from single-cell whole genome sequencing data.